HPC Modules

View the table below to see the currently installed HPC modules available to eRSA users. Modules can be searched for by name or browsed alphabetically using the “next” and “previous” buttons directly underneath the table.

Requests for Software

If you require software that is not currently installed, please contact the eRSA Service Desk team at servicedesk@ersa.edu.au or raise a ticket at support.ersa.edu.au.

BioInformatics

Health and Medical

Physics / Chemistry

BBMap
blast
blast+
bowtie
bwa
censor
COCACOLA
DIAMOND
exonerate
hmmer
jellyfish
kraken
mira
muscle
prodigal
samtools
soap
stampy
usearch
wu-blast
aragorn
clustalo
swig
fxtract
graphviz
graftM
RefineM
SingleM
BamM
roary
chewBBACA
BamM
Pytables
FinishM
BinSanity
Bracken

megahit
mira
SPAdes
stacks
trinity
checkm
kraken
metaba
metaphlan
prodigal
ribopicker
SPAdes
sparcc
SUPER-FOCUS
metaphlan
sparcc
prodigal
seer
elsa
emboss
infernal
plinkrapsearch
GroopM
pytables
FinishM
BinSanity
flopy
snippy
kSNP
seroba
ngmaster
clustalo
swig
fxtract
graphviz
sistr

prodigal
prokka
Qiime
cufflinks
ribopicker
SPAdes
STAR
tophat
gatk
snp_sites
metaba
nullarbor
prodigal
seer
seer
elsa
metaba
jellyfish
minced
cdhit
censor
snpEff
samclip
freebayes
vcflib
shovill
flash
lighter
mlst
flopy
snippy
kSNP
seroba
prank
chewBBACA
MT3D-USGS

vcftools
maker
repeatmasker
prokka
bcl2fastq
cutadapt
fastx_toolkit
pear
picard
pysam
RADtools
trimmomatic
abyss
idba
tassel
seqtk
VelvetOptimiser
metagenemark
SOAPdenovo2
bcftools
bedtools
mash
pilon
nw-utils
iqtree
snp-dists
easelprank
FastTree
ispcr
meningotype
ngmaster
shovill
snp-dists
easel
nw-utils
CIRCexplorer2

neuron
plink
nullarbor

Siesta
dirac

Phylogenetics

Statistics / Mathematics

Tools

dendropy
ExaML
gubbins
pplacer
RAxML

gsl
Canopy
lapack
math-libm
matlab
matplotlib
mplus
numpy
R
scalapack
scikit-learn
scipy
Math-CDF

anaconda
bioperl
biopython
boost
cmake
cvxopt
cython
doxygen
g95
gnu
go
gsl
hdf5
htslib
java
math-libm
pytools

mpi4py
mpiblacs
netcdf
netcdf-fortran
numpy
openblas
openmpi
pandas
pycogent
pysam
python
root
scons
screamingbackpack
slurm
sparsehash
pigz
ruby

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