System tools

  • ngmaster

    ngmaster is a In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST). Website: https://github.com/MDU-PHL/ngmaster Version: 0.4

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  • GroopM

    GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from…

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  • VariationHunter

    VariationHunter-CommonLaw is a tool for discovery of structural variation in one or more individuals simultaneously using high throughput technologies. Website:…

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  • CMake

    CMake is a family of tools designed to build, test and package software. CMake is used to control the software…

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  • m4

    GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some…

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  • ExaML

    Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm…

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  • PIL

    The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. This library supports many file formats, and…

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  • crAss

    crAss uses cross-assembly of reads from different metagenomes to assess the degree of similarity between the sampled communities.  Thus, cross-metagenome…

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  • GNUplot

    Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. The…

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  • PHYLIP

    PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a…

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  • “The supercomputing facilities at eResearch SA permit analysis of a host of interesting problems in evolutionary biology. It is the only computer system in SA that can perform certain complex calculations required to infer large evolutionary trees and associated patterns of evolution.”  
    Associate Professor Michael LeeSouth Australian Museum
  • "eResearch capabilities ... ensure we can continue to use the latest methods available in our field. The hope is that through the use of these technologies, we will be able to achieve some research outcomes that may otherwise not have been possible.”  
    Professor Ina Bornkessel-SchlesewskyCognitive Neuroscience, UniSA
  • “Having access to greater computer power helps us put in place a more realistic model in terms of the number of atoms you can have in the system and that improves the predictive power of the calculations.”
    Professor Andrea GersonMinerals and Materials Science & Technology
  • "The eRSA support is very personal and solution-focused and not just a brushing off 'it's-your-fault-check-your-code' kind of support which one sometimes gets from University tech supports. I very much appreciate the help."  
    Sven SchellenbergSchool of Science, RMIT University
  • “It would be impossible to do the type of research that we’re doing without them – it is a major factor in achieving our research outcomes.”  
    Associate Professor Con DoolanSchool of Mechanical Engineering, University of Adelaide
  • On using an eResearch program to complete 3D modelling of architectural records: “We were able to build an interactive, photo image model of the [historical South Australian property Joseph Elliot’s cottage] home – transforming simple sketches and floor plans into an interactive 3D experience... what we have now is a computerised model that allows us to experience the Elliott house beyond just words on paper”.
    Associate Professor Christine Garnaut

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